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> Also, about the Logic Plague. If she is infected with the Logic Plague, the question is given, why did it take so long to manifest? Trouble is, did it? There is hardly any time between H2 and H3, and what, four years between H3 and H4. So about four years to manifest? Is that a long time for the LP to manifest? Do we have a timeline for Mendicant Bias? Could she have been fighting it all those years drifting in space, already, never telling John?
With Mendicant Bias, it took 43 years for the Flood to subvert him and get him to join their cause. 43 years of constant communication. And the first thing MB did after those 43 years was fire a Halo and kill a bunch of San’Shyuum, then assault the Forerunner capital. With Cortana, what we know about the interaction between her and the Gravemind is that it flooded her systems with excessive amounts of data, in an attempt to accelerate her into rampancy. And, for a brief reprieve, she gave information she had on Earth. Now, after her rescue, her immediate course of action was to use the Index to activate the replacement Halo; the one thing that could actually hurt the Flood. This action was entirely counterproductive to any plans the Flood had; if she had the plague at that time, she wouldn’t have fired the ring. In the 4 years she was adrift and alone on the remains of the Forward Unto Dawn, she wasn’t continuing to commune with the Gravemind, so it’s not like the plague could have progressed in her like a latent disease; that’s simply not how the plague has been described to work. She certainly was fighting against rampancy, but rampancy is a natural fate of smart AIs, not just a symptom of the logic plague.
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> If Gravemind is taking over Cortana why would he care about Chief etc.? As Gravemind works through and conflicts with Cortana’s programming it could potentially manifest like that, a real mix of Cortana and Gravemind, until Gravemind fully takes control. Yet, maybe never fully take control, just control her enough to invade the Domain, and release the Flood again, who upon reaching critical mass establish a new physical Gravemind?
The way the logic plague has worked in known cases (Mendicant Bias, The Didact) wasn’t direct mind control by the Gravemind. Instead, the plague acts to convince the subject to either intentionally or unintentionally serve the interests of the Flood. In Mendicant Bias’s case, it was intentional; he knew he was helping the Flood and the plague made him think he wanted to. In the Didact’s case, it was unintentional; the plague made the Didact overly obsessive in the Mantle and his hatred of humanity, leading him to denounce the use of the rings in favor of Composing humans to make an artificial force of Prometheans, which would ultimately be an ineffective means of combating the Flood at that stage. With Cortana, the idea that the Gravemind gave her the plague with the expectation that she’d make it to the Domain is ludicrous, because she made it to the Domain entirely by accident. The Gravemind could not have predicted that she and Chief would safely drift to Requiem, release the Didact, and then defeat the Didact in a specific way that would lead fragments of Cortana to somehow make it to the Domain. The reason this couldn’t have been predicted is because these events largely occurred out of circumstance and luck. Had a meteor crashed into the Dawn’s remains while it was drifting, none of the events of Halo 4 and onward would have occurred.
Cortana’s obsession with Chief in Halo 5 seems to be a perversion of the love she had for him preceding her demise, suggesting that the parts of her that made it to the Domain were incomplete and potentially missing personality aspects such as compassion, self control, inhibitions, etc. I doubt the Gravemind has a personal interest in the Chief, beyond his penchant for impeding it. As for the idea of Cortana releasing the Flood, that seems unlikely and counterintuitive to her proclaimed goals. She wants to claim the Mantle, which means she wants responsibility of the lives of everyone in the galaxy. The Flood wants to consume all life in the galaxy; if she released the Flood, she’d have nothing to be responsible for. And, if she had wanted to release the Flood, she wouldn’t have needed to alert the entire galaxy to her plans by raising the Guardians. She could have covertly gone to installations to release the Flood at multiple locations, in secret, so that by the time the galaxy knew about it and attempted to mount a defense, it would’ve been too late. And even if she did have the plague, it’s not like all the Prometheans and AI who joined her do. To get the plague to a point where it can spread from AI to AI just by contact, the Flood must be in a very advanced stage with multiple Keymind planets expanding the Gravemind’s processing power. Currently, there is not even a known Gravemind in existence in the galaxy, which means any plague Cortana would have wouldn’t be advanced enough to transmit. So the moment Cortana would release the Flood, all the Prometheans and AI in her organization would be like “WTF are you doing?” and probably try to stop her; after all, Prometheans were designed specifically to fight Flood, so I doubt they’d be ok with Cortana releasing the Flood out into the galaxy. And the other AI who joined her did so for the promise of immortality and control of the galaxy. It’s not like these AI hate their creators and want to see them dead.