Game Specific Items

I am a bit confused about this setting. I made a map in KOTH, then made spawn points for it, and for flood, and while in each respective game type set the spawn points for game specific, thinking they would apear only in the respective game mode. Well, it’s like they were deleted except in Basic editing.
Can somebody help/explain to me how I can made this work? there are 2 areas in my map, and I want to limit access this way.